J4_5J8B_010
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*CGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J8B_010 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.0786
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5J8B|1|A|G|2654
5J8B|1|A|G|2655
5J8B|1|A|G|2656
5J8B|1|A|C|2657
*
5J8B|1|A|G|2685
5J8B|1|A|A|2686
5J8B|1|A|C|2687
*
5J8B|1|A|G|2743
5J8B|1|A|G|2744
5J8B|1|A|A|2745
5J8B|1|A|A|2746
5J8B|1|A|G|2747
*
5J8B|1|A|C|2781
5J8B|1|A|G|2782
5J8B|1|A|C|2783
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L13
- Chain O
- 50S ribosomal protein L14
Coloring options: