J4_5J8B_014
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5J8B|1|w|4SU|8, 5J8B|1|w|U|45, 5J8B|1|w|U|47, 5J8B|1|w|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_36296.2
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
5J8B|1|w|A|7
5J8B|1|w|4SU|8
5J8B|1|w|A|9
5J8B|1|w|G|10
*
5J8B|1|w|C|25
5J8B|1|w|A|26
5J8B|1|w|G|27
*
5J8B|1|w|C|43
5J8B|1|w|G|44
5J8B|1|w|U|45
5J8B|1|w|7MG|46
5J8B|1|w|U|47
5J8B|1|w|C|48
5J8B|1|w|C|49
*
5J8B|1|w|G|65
5J8B|1|w|U|66
Current chains
- Chain w
- A-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain z
- GDPCP fused to the N-terminus of the ribosomal protein L9,Elongation factor 4
Coloring options: