Motif J4_36296.2 Version J4_36296.2 of this group appears in releases 3.84 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 3-4 | 3-8 | 5-8 | 6-7 | 6-8 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4YCO_001 | 4YCO | 0.3429 | 4 | tRNA junction | D | tRNA | A | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | G | 27 | * | C | 43 | G | 44 | G | 46 | C | 49 | * | G | 65 | U | 66 | cWW | cWW | cWW | cWW | |||
| 2 | J4_2CSX_001 | 2CSX | 0.0000 | 4 | tRNA junction | C | RNA (75-MER) | G | 7 | A | 9 | G | 10 | * | C | 25 | G | 26 | G | 27 | * | C | 43 | A | 44 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | ncHS | cWW | cWW | ||
| 3 | J4_3WFS_001 | 3WFS | 0.1990 | 4 | tRNA junction | A | tRNA | G | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | C | 27 | * | G | 43 | G | 44 | G | 46 | G | 49 | * | C | 65 | C | 66 | cWW | cWW | cHW | cWW | cWW | ||
| 4 | J4_1QTQ_001 | 1QTQ | 0.4016 | 4 | tRNA junction | B | tRNA | A | 907 | C | 909 | G | 910 | * | C | 925 | A | 926 | C | 927 | * | G | 943 | C | 944 | A | 945 | C | 949 | * | G | 965 | U | 966 | cWW | cWW | cWW | cWW | cWW | ||
| 5 | J4_5J8B_014 | 5J8B | 0.5192 | 4 | tRNA junction (H) | w | tRNA | A | 7 | A | 9 | G | 10 | * | C | 25 | A | 26 | G | 27 | * | C | 43 | G | 44 | 7MG | 46 | C | 49 | * | G | 65 | U | 66 | cWW | cWW | cWW | ntSH | cWW | ||
| 6 | J4_1B23_001 | 1B23 | 0.6424 | 3 | tRNA junction | R | tRNA | U | 7 | A | 9 | A | 10 | * | U | 25 | A | 26 | G | 27 | * | U | 43 | C | 44 | A | 46 | U | 49 | * | A | 65 | A | 66 | cWW | cWW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAG*CAG*CGUGUCC*GU | 1 |
| GUAG*CGG*CAGGUCG*CC | 1 |
| GUAG*CAC*GGUGUCG*CC | 1 |
| AUCG*CAC*GCAUUCC*GU | 1 |
| A(4SU)AG*CAG*CGU(7MG)UCC*GU | 1 |
| U(4SU)AA*UAG*UCUAGU*AA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*A*GUGUC* | 2 |
| UA*G*AGGUC* | 1 |
| UC*A*CAUUC* | 1 |
| (4SU)A*A*GU(7MG)UC* | 1 |
| (4SU)A*A*CUAG* | 1 |
Release history
| Release | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA junction (5)
- tRNA junction (H) (1)
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Heat map statistics
- Min 0.20 | Avg 0.42 | Max 0.75
Coloring options: