J4_5JU8_012

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JU8_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0816

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5JU8|1|BA|A|1772
5JU8|1|BA|A|1773
5JU8|1|BA|C|1774
5JU8|1|BA|U|1775
5JU8|1|BA|G|1776
*
5JU8|1|BA|C|1788
5JU8|1|BA|A|1789
5JU8|1|BA|C|1790
5JU8|1|BA|A|1791
5JU8|1|BA|G|1792
*
5JU8|1|BA|U|1827
5JU8|1|BA|G|1828
5JU8|1|BA|A|1829
5JU8|1|BA|C|1830
*
5JU8|1|BA|G|1975
5JU8|1|BA|U|1976
5JU8|1|BA|A|1977
5JU8|1|BA|A|1978
5JU8|1|BA|U|1979

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2