J4_5JU8_017
3D structure
- PDB id
- 5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 5JU8|1|BA|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JU8_017 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1656
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JU8|1|BA|C|2285
5JU8|1|BA|G|2286
5JU8|1|BA|A|2287
5JU8|1|BA|A|2288
5JU8|1|BA|G|2289
*
5JU8|1|BA|U|2343
5JU8|1|BA|U|2344
5JU8|1|BA|G|2345
5JU8|1|BA|A|2346
5JU8|1|BA|C|2347
*
5JU8|1|BA|G|2370
5JU8|1|BA|G|2371
5JU8|1|BA|U|2372
*
5JU8|1|BA|A|2381
5JU8|1|BA|G|2382
5JU8|1|BA|G|2383
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B1
- 50S ribosomal protein L33
- Chain B3
- 50S ribosomal protein L35
- Chain BO
- 50S ribosomal protein L18
- Chain BW
- 50S ribosomal protein L27
Coloring options: