J4_5JUO_004
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JUO_004 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.2253
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_12410.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUO|1|B|C|185
5JUO|1|B|U|186
5JUO|1|B|A|187
5JUO|1|B|U|188
5JUO|1|B|G|189
*
5JUO|1|B|C|205
5JUO|1|B|G|206
5JUO|1|B|U|207
5JUO|1|B|C|208
*
5JUO|1|B|G|212
5JUO|1|B|A|213
5JUO|1|B|G|214
*
5JUO|1|B|C|226
5JUO|1|B|G|227
5JUO|1|B|U|228
5JUO|1|B|G|229
5JUO|1|B|U|230
5JUO|1|B|G|231
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
Coloring options: