J4_5JUP_005
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5JUP|1|B|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JUP_005 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.1259
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUP|1|B|G|1492
5JUP|1|B|G|1493
5JUP|1|B|U|1494
5JUP|1|B|U|1495
5JUP|1|B|C|1496
*
5JUP|1|B|G|1520
5JUP|1|B|G|1521
5JUP|1|B|U|1522
5JUP|1|B|U|1523
5JUP|1|B|A|1524
5JUP|1|B|G|1525
*
5JUP|1|B|C|1614
5JUP|1|B|C|1615
*
5JUP|1|B|G|1829
5JUP|1|B|G|1830
5JUP|1|B|U|1831
5JUP|1|B|C|1832
5JUP|1|B|G|1833
5JUP|1|B|U|1834
5JUP|1|B|A|1835
5JUP|1|B|C|1836
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- uL23 (yeast L25)
- Chain LA
- eL34 (yeast L34)
- Chain OA
- eL37 (yeast L37)
- Chain PA
- eL38 (yeast L38)
- Chain QA
- eL39 (yeast L39)
- Chain W
- eL19 (yeast L19)
Coloring options: