J4_5JUS_006
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- 5JUS|1|B|U|2319
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JUS_006 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.2134
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUS|1|B|G|2130
5JUS|1|B|A|2131
5JUS|1|B|C|2132
5JUS|1|B|U|2133
5JUS|1|B|G|2134
*
5JUS|1|B|C|2146
5JUS|1|B|A|2147
5JUS|1|B|U|2148
5JUS|1|B|A|2149
5JUS|1|B|G|2150
*
5JUS|1|B|U|2186
5JUS|1|B|G|2187
5JUS|1|B|A|2188
5JUS|1|B|U|2189
5JUS|1|B|U|2190
*
5JUS|1|B|A|2317
5JUS|1|B|U|2318
5JUS|1|B|U|2319
5JUS|1|B|A|2320
5JUS|1|B|A|2321
5JUS|1|B|C|2322
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain F
- uL2 (yeast L2)
- Chain SA
- eL41 (yeast L41)
- Chain UA
- eL43 (yeast L43)
Coloring options: