J4_5JUS_007
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5JUS|1|B|A|2270, 5JUS|1|B|G|2272, 5JUS|1|B|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JUS_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.5133
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
5JUS|1|B|C|2192
5JUS|1|B|U|2193
5JUS|1|B|G|2194
*
5JUS|1|B|C|2248
5JUS|1|B|G|2249
*
5JUS|1|B|C|2267
5JUS|1|B|U|2268
5JUS|1|B|U|2269
5JUS|1|B|A|2270
5JUS|1|B|A|2271
5JUS|1|B|G|2272
5JUS|1|B|G|2273
5JUS|1|B|U|2274
5JUS|1|B|A|2275
5JUS|1|B|G|2276
*
5JUS|1|B|U|2310
5JUS|1|B|G|2311
5JUS|1|B|A|2312
5JUS|1|B|A|2313
5JUS|1|B|U|2314
5JUS|1|B|G|2315
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain EC
- IRES
- Chain F
- uL2 (yeast L2)
- Chain SA
- eL41 (yeast L41)
Coloring options: