J4_5JUT_002
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 5JUT|1|A|A|623, 5JUT|1|A|A|1026, 5JUT|1|A|C|1028, 5JUT|1|A|U|1029, 5JUT|1|A|A|1030, 5JUT|1|A|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JUT_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1562
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5JUT|1|A|A|622
5JUT|1|A|A|623
5JUT|1|A|G|624
*
5JUT|1|A|C|975
5JUT|1|A|G|976
5JUT|1|A|A|977
5JUT|1|A|A|978
5JUT|1|A|A|979
5JUT|1|A|G|980
*
5JUT|1|A|C|1021
5JUT|1|A|C|1022
5JUT|1|A|A|1023
5JUT|1|A|U|1024
5JUT|1|A|A|1025
5JUT|1|A|A|1026
5JUT|1|A|A|1027
5JUT|1|A|C|1028
5JUT|1|A|U|1029
5JUT|1|A|A|1030
5JUT|1|A|U|1031
5JUT|1|A|G|1032
*
5JUT|1|A|U|1103
5JUT|1|A|U|1104
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain IB
- uS17 (yeast S11)
- Chain KB
- uS15 (yeast S13)
- Chain LB
- uS11 (yeast S14)
- Chain SA
- eL41 (yeast L41)
- Chain TB
- uS8 (yeast S22)
- Chain UA
- eL43 (yeast L43)
- Chain UB
- uS12 (yeast S23)
- Chain XB
- eS26 (yeast S26)
Coloring options: