J4_5K0Y_002
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 5K0Y|1|A|A|662, 5K0Y|1|A|A|1079, 5K0Y|1|A|C|1081, 5K0Y|1|A|A|1083
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5K0Y_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1369
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|A|661
5K0Y|1|A|A|662
5K0Y|1|A|G|663
*
5K0Y|1|A|C|1028
5K0Y|1|A|G|1029
5K0Y|1|A|A|1030
5K0Y|1|A|A|1031
5K0Y|1|A|A|1032
5K0Y|1|A|G|1033
*
5K0Y|1|A|C|1074
5K0Y|1|A|C|1075
5K0Y|1|A|A|1076
5K0Y|1|A|U|1077
5K0Y|1|A|A|1078
5K0Y|1|A|A|1079
5K0Y|1|A|A|1080
5K0Y|1|A|C|1081
5K0Y|1|A|G|1082
5K0Y|1|A|A|1083
5K0Y|1|A|U|1084
5K0Y|1|A|G|1085
*
5K0Y|1|A|U|1156
5K0Y|1|A|U|1157
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein uS17
- Chain Q
- ribosomal protein uS12
- Chain Z
- ribosomal protein uS15
- Chain a
- ribosomal protein uS8
- Chain j
- ribosomal protein uS11
- Chain k
- ribosomal protein eS26
Coloring options: