J4_5KCR_004

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

5KCR|1|1A|G|1271, 5KCR|1|1A|A|1272, 5KCR|1|1A|U|1273, 5KCR|1|1A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KCR_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0399

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5KCR|1|1A|C|1270
5KCR|1|1A|G|1271
5KCR|1|1A|A|1272
5KCR|1|1A|U|1273
5KCR|1|1A|A|1274
5KCR|1|1A|A|1275
5KCR|1|1A|A|1276
*
5KCR|1|1A|U|1294
5KCR|1|1A|C|1295
*
5KCR|1|1A|G|1645
5KCR|1|1A|C|1646
5KCR|1|1A|U|1647
5KCR|1|1A|U|1648
*
5KCR|1|1A|A|2009
5KCR|1|1A|G|2010

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1R

50S ribosomal protein L17

Chain 1W

50S ribosomal protein L22