J4_5KCR_013

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5KCR|1|1a|C|183, 5KCR|1|1a|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KCR_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1578

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5KCR|1|1a|G|142
5KCR|1|1a|A|143
5KCR|1|1a|G|144
*
5KCR|1|1a|C|178
5KCR|1|1a|A|179
5KCR|1|1a|U|180
5KCR|1|1a|A|181
5KCR|1|1a|A|182
5KCR|1|1a|C|183
5KCR|1|1a|G|184
*
5KCR|1|1a|C|193
5KCR|1|1a|C|194
5KCR|1|1a|A|195
5KCR|1|1a|A|196
5KCR|1|1a|A|197
5KCR|1|1a|G|198
*
5KCR|1|1a|U|219
5KCR|1|1a|G|220
5KCR|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20