J4_5KCS_007

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KCS_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0907

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5KCS|1|1A|A|1772
5KCS|1|1A|A|1773
5KCS|1|1A|C|1774
5KCS|1|1A|U|1775
5KCS|1|1A|G|1776
*
5KCS|1|1A|C|1788
5KCS|1|1A|A|1789
5KCS|1|1A|C|1790
5KCS|1|1A|A|1791
5KCS|1|1A|G|1792
*
5KCS|1|1A|U|1827
5KCS|1|1A|G|1828
5KCS|1|1A|A|1829
5KCS|1|1A|C|1830
*
5KCS|1|1A|G|1975
5KCS|1|1A|U|1976
5KCS|1|1A|A|1977
5KCS|1|1A|A|1978
5KCS|1|1A|U|1979

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA