J4_5KPS_001

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5KPS|1|27|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPS_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2774

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5KPS|1|27|G|115
5KPS|1|27|A|116
5KPS|1|27|G|117
5KPS|1|27|U|118
5KPS|1|27|A|119
5KPS|1|27|A|120
5KPS|1|27|U|121
5KPS|1|27|G|122
*
5KPS|1|27|U|239
5KPS|1|27|G|240
*
5KPS|1|27|C|286
5KPS|1|27|U|287
5KPS|1|27|A|288
5KPS|1|27|G|289
*
5KPS|1|27|C|311
5KPS|1|27|C|312

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 21

30S ribosomal protein S16

Chain 22

30S ribosomal protein S17