J4_5KPS_002

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5KPS|1|27|C|183, 5KPS|1|27|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPS_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1437

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5KPS|1|27|G|142
5KPS|1|27|A|143
5KPS|1|27|G|144
*
5KPS|1|27|C|178
5KPS|1|27|A|179
5KPS|1|27|U|180
5KPS|1|27|A|181
5KPS|1|27|A|182
5KPS|1|27|C|183
5KPS|1|27|G|184
*
5KPS|1|27|C|193
5KPS|1|27|C|194
5KPS|1|27|A|195
5KPS|1|27|A|196
5KPS|1|27|A|197
5KPS|1|27|G|198
*
5KPS|1|27|U|219
5KPS|1|27|G|220
5KPS|1|27|C|221

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 25

30S ribosomal protein S20