J4_5KPS_004

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5KPS|1|28|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPS_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1471

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5KPS|1|28|C|268
5KPS|1|28|C|269
*
5KPS|1|28|G|370
5KPS|1|28|A|371
5KPS|1|28|G|372
5KPS|1|28|U|373
5KPS|1|28|A|374
5KPS|1|28|G|375
*
5KPS|1|28|U|399
5KPS|1|28|G|400
5KPS|1|28|A|401
5KPS|1|28|A|402
5KPS|1|28|U|403
5KPS|1|28|A|404
5KPS|1|28|U|405
5KPS|1|28|G|406
*
5KPS|1|28|C|421
5KPS|1|28|A|422
5KPS|1|28|A|423
5KPS|1|28|G|424

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28