J4_5KPW_010

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPW_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1006

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5KPW|1|27|A|1772
5KPW|1|27|A|1773
5KPW|1|27|C|1774
5KPW|1|27|U|1775
5KPW|1|27|G|1776
*
5KPW|1|27|C|1788
5KPW|1|27|A|1789
5KPW|1|27|C|1790
5KPW|1|27|A|1791
5KPW|1|27|G|1792
*
5KPW|1|27|U|1827
5KPW|1|27|G|1828
5KPW|1|27|A|1829
5KPW|1|27|C|1830
*
5KPW|1|27|G|1975
5KPW|1|27|U|1976
5KPW|1|27|A|1977
5KPW|1|27|A|1978
5KPW|1|27|U|1979

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2