J4_5L3P_001

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5L3P|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5L3P_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.182

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5L3P|1|A|C|268
5L3P|1|A|C|269
*
5L3P|1|A|G|370
5L3P|1|A|A|371
5L3P|1|A|G|372
5L3P|1|A|U|373
5L3P|1|A|A|374
5L3P|1|A|G|375
*
5L3P|1|A|U|399
5L3P|1|A|G|400
5L3P|1|A|A|401
5L3P|1|A|A|402
5L3P|1|A|U|403
5L3P|1|A|A|404
5L3P|1|A|U|405
5L3P|1|A|G|406
*
5L3P|1|A|C|421
5L3P|1|A|A|422
5L3P|1|A|A|423
5L3P|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain I

50S ribosomal protein L9