J4_5L3P_003

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

5L3P|1|A|G|1271, 5L3P|1|A|A|1272, 5L3P|1|A|U|1273, 5L3P|1|A|A|1275, 5L3P|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5L3P_003 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1482

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5L3P|1|A|C|1270
5L3P|1|A|G|1271
5L3P|1|A|A|1272
5L3P|1|A|U|1273
5L3P|1|A|A|1274
5L3P|1|A|A|1275
5L3P|1|A|A|1276
*
5L3P|1|A|U|1294
5L3P|1|A|C|1295
*
5L3P|1|A|G|1645
5L3P|1|A|C|1646
5L3P|1|A|U|1647
5L3P|1|A|U|1648
*
5L3P|1|A|A|2009
5L3P|1|A|G|2010

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain R

50S ribosomal protein L17

Chain W

50S ribosomal protein L22