J4_5L3P_017

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5L3P|1|a|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5L3P_017 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3156

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5L3P|1|a|G|115
5L3P|1|a|A|116
5L3P|1|a|G|117
5L3P|1|a|U|118
5L3P|1|a|A|119
5L3P|1|a|A|120
5L3P|1|a|U|121
5L3P|1|a|G|122
*
5L3P|1|a|U|239
5L3P|1|a|G|240
*
5L3P|1|a|C|286
5L3P|1|a|U|287
5L3P|1|a|A|288
5L3P|1|a|G|289
*
5L3P|1|a|C|311
5L3P|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17