J4_5L3P_018

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5L3P|1|a|C|183, 5L3P|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5L3P_018 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.192

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5L3P|1|a|G|142
5L3P|1|a|A|143
5L3P|1|a|G|144
*
5L3P|1|a|C|178
5L3P|1|a|A|179
5L3P|1|a|U|180
5L3P|1|a|A|181
5L3P|1|a|A|182
5L3P|1|a|C|183
5L3P|1|a|G|184
*
5L3P|1|a|C|193
5L3P|1|a|C|194
5L3P|1|a|A|195
5L3P|1|a|A|196
5L3P|1|a|A|197
5L3P|1|a|G|198
*
5L3P|1|a|U|219
5L3P|1|a|G|220
5L3P|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20