3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUUUC*GGUUAG*CC*GCCCGUAC
Length
21 nucleotides
Bulged bases
5LI0|1|A|U|1378
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5LI0_005 not in the Motif Atlas
Homologous match to J4_4WF9_005
Geometric discrepancy: 0.1181
The information below is about J4_4WF9_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5LI0|1|A|G|1347
5LI0|1|A|U|1348
5LI0|1|A|U|1349
5LI0|1|A|U|1350
5LI0|1|A|C|1351
*
5LI0|1|A|G|1375
5LI0|1|A|G|1376
5LI0|1|A|U|1377
5LI0|1|A|U|1378
5LI0|1|A|A|1379
5LI0|1|A|G|1380
*
5LI0|1|A|C|1441
5LI0|1|A|C|1442
*
5LI0|1|A|G|1641
5LI0|1|A|C|1642
5LI0|1|A|C|1643
5LI0|1|A|C|1644
5LI0|1|A|G|1645
5LI0|1|A|U|1646
5LI0|1|A|A|1647
5LI0|1|A|C|1648

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 6
50S ribosomal protein L34
Chain W
50S ribosomal protein L23

Coloring options:


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