J4_5LI0_005
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUUC*GGUUAG*CC*GCCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5LI0|1|A|U|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LI0_005 not in the Motif Atlas
- Homologous match to J4_4WF9_005
- Geometric discrepancy: 0.1181
- The information below is about J4_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5LI0|1|A|G|1347
5LI0|1|A|U|1348
5LI0|1|A|U|1349
5LI0|1|A|U|1350
5LI0|1|A|C|1351
*
5LI0|1|A|G|1375
5LI0|1|A|G|1376
5LI0|1|A|U|1377
5LI0|1|A|U|1378
5LI0|1|A|A|1379
5LI0|1|A|G|1380
*
5LI0|1|A|C|1441
5LI0|1|A|C|1442
*
5LI0|1|A|G|1641
5LI0|1|A|C|1642
5LI0|1|A|C|1643
5LI0|1|A|C|1644
5LI0|1|A|G|1645
5LI0|1|A|U|1646
5LI0|1|A|A|1647
5LI0|1|A|C|1648
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain W
- 50S ribosomal protein L23
Coloring options: