J4_5LI0_005

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

5LI0|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LI0_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1181

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5LI0|1|A|G|1347
5LI0|1|A|U|1348
5LI0|1|A|U|1349
5LI0|1|A|U|1350
5LI0|1|A|C|1351
*
5LI0|1|A|G|1375
5LI0|1|A|G|1376
5LI0|1|A|U|1377
5LI0|1|A|U|1378
5LI0|1|A|A|1379
5LI0|1|A|G|1380
*
5LI0|1|A|C|1441
5LI0|1|A|C|1442
*
5LI0|1|A|G|1641
5LI0|1|A|C|1642
5LI0|1|A|C|1643
5LI0|1|A|C|1644
5LI0|1|A|G|1645
5LI0|1|A|U|1646
5LI0|1|A|A|1647
5LI0|1|A|C|1648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain W

50S ribosomal protein L23