J4_5LI0_009
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 5LI0|1|A|A|2315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LI0_009 not in the Motif Atlas
- Homologous match to J4_4WF9_008
- Geometric discrepancy: 0.1818
- The information below is about J4_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5LI0|1|A|C|2312
5LI0|1|A|A|2313
5LI0|1|A|A|2314
5LI0|1|A|A|2315
5LI0|1|A|G|2316
*
5LI0|1|A|U|2370
5LI0|1|A|U|2371
5LI0|1|A|G|2372
5LI0|1|A|A|2373
5LI0|1|A|C|2374
*
5LI0|1|A|G|2397
5LI0|1|A|G|2398
5LI0|1|A|G|2399
*
5LI0|1|A|C|2408
5LI0|1|A|G|2409
5LI0|1|A|G|2410
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L33 2
- Chain 7
- 50S ribosomal protein L35
- Chain R
- 50S ribosomal protein L18
- Chain Z
- 50S ribosomal protein L27
Coloring options: