J4_5LKS_021

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

5LKS|1|L5|A|2366, 5LKS|1|L5|U|2369, 5LKS|1|L5|A|2370, 5LKS|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|2365
5LKS|1|L5|A|2366
5LKS|1|L5|A|2367
5LKS|1|L5|A|2368
5LKS|1|L5|U|2369
5LKS|1|L5|A|2370
5LKS|1|L5|U|2371
*
5LKS|1|L5|A|2389
5LKS|1|L5|G|2390
5LKS|1|L5|G|2391
*
5LKS|1|L5|C|2824
5LKS|1|L5|A|2825
5LKS|1|L5|U|2826
5LKS|1|L5|G|2827
5LKS|1|L5|U|2828
5LKS|1|L5|U|2829
*
5LKS|1|L5|A|3856
5LKS|1|L5|G|3857

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31