J4_5LMO_002

3D structure

PDB id

5LMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LMO_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1284

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5LMO|1|A|G|142
5LMO|1|A|A|143
5LMO|1|A|G|144
*
5LMO|1|A|C|178
5LMO|1|A|A|179
5LMO|1|A|U|180
5LMO|1|A|G|181
5LMO|1|A|U|182
5LMO|1|A|G|183
*
5LMO|1|A|C|194
5LMO|1|A|A|195
5LMO|1|A|A|196
5LMO|1|A|A|197
5LMO|1|A|G|198
*
5LMO|1|A|C|219
5LMO|1|A|G|220
5LMO|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20