J4_5LMP_002

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LMP_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.13

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5LMP|1|A|G|142
5LMP|1|A|A|143
5LMP|1|A|G|144
*
5LMP|1|A|C|178
5LMP|1|A|A|179
5LMP|1|A|U|180
5LMP|1|A|G|181
5LMP|1|A|U|182
5LMP|1|A|G|183
*
5LMP|1|A|C|194
5LMP|1|A|A|195
5LMP|1|A|A|196
5LMP|1|A|A|197
5LMP|1|A|G|198
*
5LMP|1|A|C|219
5LMP|1|A|G|220
5LMP|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20