J4_5LMS_002

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LMS_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1358

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5LMS|1|A|G|142
5LMS|1|A|A|143
5LMS|1|A|G|144
*
5LMS|1|A|C|178
5LMS|1|A|A|179
5LMS|1|A|U|180
5LMS|1|A|G|181
5LMS|1|A|U|182
5LMS|1|A|G|183
*
5LMS|1|A|C|194
5LMS|1|A|A|195
5LMS|1|A|A|196
5LMS|1|A|A|197
5LMS|1|A|G|198
*
5LMS|1|A|C|219
5LMS|1|A|G|220
5LMS|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20