J4_5LMT_002

3D structure

PDB id

5LMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.15 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5LMT|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LMT_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.114

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5LMT|1|A|G|142
5LMT|1|A|A|143
5LMT|1|A|G|144
*
5LMT|1|A|C|178
5LMT|1|A|A|179
5LMT|1|A|U|180
5LMT|1|A|G|181
5LMT|1|A|U|182
5LMT|1|A|G|183
*
5LMT|1|A|C|194
5LMT|1|A|A|195
5LMT|1|A|A|196
5LMT|1|A|A|197
5LMT|1|A|G|198
*
5LMT|1|A|C|219
5LMT|1|A|G|220
5LMT|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20