J4_5LMU_002

3D structure

PDB id

5LMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5LMU|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LMU_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1323

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5LMU|1|A|G|142
5LMU|1|A|A|143
5LMU|1|A|G|144
*
5LMU|1|A|C|178
5LMU|1|A|A|179
5LMU|1|A|U|180
5LMU|1|A|G|181
5LMU|1|A|U|182
5LMU|1|A|G|183
*
5LMU|1|A|C|194
5LMU|1|A|A|195
5LMU|1|A|A|196
5LMU|1|A|A|197
5LMU|1|A|G|198
*
5LMU|1|A|C|219
5LMU|1|A|G|220
5LMU|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20