J4_5LZB_001

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5LZB|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZB_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1465

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5LZB|1|A|C|268
5LZB|1|A|C|269
*
5LZB|1|A|G|370
5LZB|1|A|A|371
5LZB|1|A|G|372
5LZB|1|A|U|373
5LZB|1|A|A|374
5LZB|1|A|G|375
*
5LZB|1|A|U|399
5LZB|1|A|G|400
5LZB|1|A|A|401
5LZB|1|A|A|402
5LZB|1|A|U|403
5LZB|1|A|A|404
5LZB|1|A|U|405
5LZB|1|A|G|406
*
5LZB|1|A|C|421
5LZB|1|A|A|422
5LZB|1|A|A|423
5LZB|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28