J4_5LZB_003

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

5LZB|1|A|G|1271, 5LZB|1|A|A|1272, 5LZB|1|A|U|1273, 5LZB|1|A|A|1274, 5LZB|1|A|C|1646, 5LZB|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZB_003 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1847

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5LZB|1|A|C|1270
5LZB|1|A|G|1271
5LZB|1|A|A|1272
5LZB|1|A|U|1273
5LZB|1|A|A|1274
5LZB|1|A|A|1275
5LZB|1|A|A|1276
*
5LZB|1|A|U|1294
5LZB|1|A|C|1295
*
5LZB|1|A|G|1645
5LZB|1|A|C|1646
5LZB|1|A|U|1647
5LZB|1|A|U|1648
*
5LZB|1|A|A|2009
5LZB|1|A|G|2010

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22