J4_5LZB_012

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5LZB|1|a|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZB_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1785

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZB|1|a|G|142
5LZB|1|a|A|143
5LZB|1|a|G|144
*
5LZB|1|a|C|178
5LZB|1|a|A|179
5LZB|1|a|U|180
5LZB|1|a|A|181
5LZB|1|a|A|182
5LZB|1|a|C|183
5LZB|1|a|G|184
*
5LZB|1|a|C|193
5LZB|1|a|C|194
5LZB|1|a|A|195
5LZB|1|a|A|196
5LZB|1|a|A|197
5LZB|1|a|G|198
*
5LZB|1|a|U|219
5LZB|1|a|G|220
5LZB|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20