J4_5LZE_001

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5LZE|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZE_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1413

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5LZE|1|A|C|268
5LZE|1|A|C|269
*
5LZE|1|A|G|370
5LZE|1|A|A|371
5LZE|1|A|G|372
5LZE|1|A|U|373
5LZE|1|A|A|374
5LZE|1|A|G|375
*
5LZE|1|A|U|399
5LZE|1|A|G|400
5LZE|1|A|A|401
5LZE|1|A|A|402
5LZE|1|A|U|403
5LZE|1|A|A|404
5LZE|1|A|U|405
5LZE|1|A|G|406
*
5LZE|1|A|C|421
5LZE|1|A|A|422
5LZE|1|A|A|423
5LZE|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28