J4_5LZE_012

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5LZE|1|a|C|183, 5LZE|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZE_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2012

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZE|1|a|G|142
5LZE|1|a|A|143
5LZE|1|a|G|144
*
5LZE|1|a|C|178
5LZE|1|a|A|179
5LZE|1|a|U|180
5LZE|1|a|A|181
5LZE|1|a|A|182
5LZE|1|a|C|183
5LZE|1|a|G|184
*
5LZE|1|a|C|193
5LZE|1|a|C|194
5LZE|1|a|A|195
5LZE|1|a|A|196
5LZE|1|a|A|197
5LZE|1|a|G|198
*
5LZE|1|a|U|219
5LZE|1|a|G|220
5LZE|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20