J4_5LZF_005

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

5LZF|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZF_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1111

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5LZF|1|A|U|1313
5LZF|1|A|C|1314
*
5LZF|1|A|G|1338
5LZF|1|A|G|1339
5LZF|1|A|U|1340
5LZF|1|A|G|1341
5LZF|1|A|A|1342
5LZF|1|A|G|1343
*
5LZF|1|A|C|1404
5LZF|1|A|U|1405
*
5LZF|1|A|A|1597
5LZF|1|A|A|1598
5LZF|1|A|U|1599
5LZF|1|A|C|1600
5LZF|1|A|G|1601
5LZF|1|A|U|1602
5LZF|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23