J4_5LZF_007

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZF_007 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0933

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5LZF|1|A|A|1772
5LZF|1|A|A|1773
5LZF|1|A|C|1774
5LZF|1|A|U|1775
5LZF|1|A|G|1776
*
5LZF|1|A|C|1788
5LZF|1|A|A|1789
5LZF|1|A|C|1790
5LZF|1|A|A|1791
5LZF|1|A|G|1792
*
5LZF|1|A|U|1827
5LZF|1|A|G|1828
5LZF|1|A|A|1829
5LZF|1|A|C|1830
*
5LZF|1|A|G|1975
5LZF|1|A|U|1976
5LZF|1|A|A|1977
5LZF|1|A|A|1978
5LZF|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2