J4_5LZF_012

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5LZF|1|a|C|183, 5LZF|1|a|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZF_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2085

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZF|1|a|G|142
5LZF|1|a|A|143
5LZF|1|a|G|144
*
5LZF|1|a|C|178
5LZF|1|a|A|179
5LZF|1|a|U|180
5LZF|1|a|A|181
5LZF|1|a|A|182
5LZF|1|a|C|183
5LZF|1|a|G|184
*
5LZF|1|a|C|193
5LZF|1|a|C|194
5LZF|1|a|A|195
5LZF|1|a|A|196
5LZF|1|a|A|197
5LZF|1|a|G|198
*
5LZF|1|a|U|219
5LZF|1|a|G|220
5LZF|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20