J4_5LZF_015

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5LZF|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZF_015 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3002

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5LZF|1|a|G|115
5LZF|1|a|A|116
5LZF|1|a|G|117
5LZF|1|a|U|118
5LZF|1|a|A|119
5LZF|1|a|A|120
5LZF|1|a|U|121
5LZF|1|a|G|122
*
5LZF|1|a|U|239
5LZF|1|a|G|240
*
5LZF|1|a|C|286
5LZF|1|a|U|287
5LZF|1|a|A|288
5LZF|1|a|G|289
*
5LZF|1|a|C|311
5LZF|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17