J4_5LZW_012
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 5LZW|1|9|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LZW_012 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1729
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5LZW|1|9|C|98
5LZW|1|9|A|99
5LZW|1|9|U|100
5LZW|1|9|U|101
5LZW|1|9|A|102
5LZW|1|9|A|103
5LZW|1|9|A|104
5LZW|1|9|U|105
5LZW|1|9|C|106
*
5LZW|1|9|G|355
5LZW|1|9|C|356
5LZW|1|9|C|357
*
5LZW|1|9|G|405
5LZW|1|9|U|406
5LZW|1|9|G|407
5LZW|1|9|A|408
5LZW|1|9|C|409
*
5LZW|1|9|G|431
5LZW|1|9|G|432
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain EE
- eS4
- Chain II
- eS8
- Chain LL
- uS17
- Chain XX
- uS12
Coloring options: