J4_5M1J_001
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 5M1J|1|14|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5M1J_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1181
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5M1J|1|14|U|112
5M1J|1|14|C|113
*
5M1J|1|14|G|267
5M1J|1|14|A|268
5M1J|1|14|G|269
5M1J|1|14|U|270
5M1J|1|14|C|271
5M1J|1|14|G|272
*
5M1J|1|14|C|293
5M1J|1|14|U|294
5M1J|1|14|A|295
5M1J|1|14|A|296
5M1J|1|14|G|297
5M1J|1|14|U|298
5M1J|1|14|G|299
*
5M1J|1|14|U|316
5M1J|1|14|A|317
5M1J|1|14|A|318
5M1J|1|14|A|319
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain L5
- 60S ribosomal protein L13-A
- Chain N5
- 60S ribosomal protein L15-A
- Chain h5
- 60S ribosomal protein L35-A
- Chain i5
- 60S ribosomal protein L36-A
Coloring options: