J4_5M1J_003

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

5M1J|1|14|A|1452, 5M1J|1|14|U|1455, 5M1J|1|14|A|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5M1J_003 not in the Motif Atlas

Homologous match to J4_8P9A_014

Geometric discrepancy: 0.1293

The information below is about J4_8P9A_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_87855.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5M1J|1|14|C|1451
5M1J|1|14|A|1452
5M1J|1|14|A|1453
5M1J|1|14|A|1454
5M1J|1|14|U|1455
5M1J|1|14|A|1456
5M1J|1|14|U|1457
*
5M1J|1|14|A|1475
5M1J|1|14|G|1476
*
5M1J|1|14|U|1877
5M1J|1|14|G|1878
5M1J|1|14|A|1879
5M1J|1|14|U|1880
*
5M1J|1|14|A|2352
5M1J|1|14|G|2353

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain P5

60S ribosomal protein L17-A

Chain R5

60S ribosomal protein L19-A

Chain d5

60S ribosomal protein L31-A