3D structure

PDB id
5M1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nonstop ribosomal complex bound with Dom34 and Hbs1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
5M1J|1|14|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5M1J_004 not in the Motif Atlas
Homologous match to J4_8P9A_015
Geometric discrepancy: 0.1117
The information below is about J4_8P9A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5M1J|1|14|G|1492
5M1J|1|14|G|1493
5M1J|1|14|U|1494
5M1J|1|14|U|1495
5M1J|1|14|C|1496
*
5M1J|1|14|G|1520
5M1J|1|14|G|1521
5M1J|1|14|U|1522
5M1J|1|14|U|1523
5M1J|1|14|A|1524
5M1J|1|14|G|1525
*
5M1J|1|14|C|1614
5M1J|1|14|C|1615
*
5M1J|1|14|G|1829
5M1J|1|14|G|1830
5M1J|1|14|U|1831
5M1J|1|14|C|1832
5M1J|1|14|G|1833
5M1J|1|14|U|1834
5M1J|1|14|A|1835
5M1J|1|14|C|1836

Current chains

Chain 14
25S ribosomal RNA

Nearby chains

Chain 44
5.8S ribosomal RNA; 5.8S rRNA
Chain R5
60S ribosomal protein L19-A
Chain X5
60S ribosomal protein L25
Chain g5
60S ribosomal protein L34-A
Chain j5
60S ribosomal protein L37-A
Chain k5
60S ribosomal protein L38
Chain l5
60S ribosomal protein L39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.445 s