J4_5M1J_009

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5M1J_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.1356

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5M1J|1|14|U|3010
5M1J|1|14|A|3011
5M1J|1|14|A|3012
*
5M1J|1|14|U|3042
5M1J|1|14|C|3043
*
5M1J|1|14|G|3098
5M1J|1|14|C|3099
5M1J|1|14|U|3100
*
5M1J|1|14|A|3134
5M1J|1|14|U|3135
5M1J|1|14|G|3136

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain K5

60S ribosomal protein L16-A

Chain V5

60S ribosomal protein L23-A