J4_5MC6_002
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 5MC6|1|2|U|1024, 5MC6|1|2|A|1026
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MC6_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1161
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
5MC6|1|2|A|622
5MC6|1|2|A|623
5MC6|1|2|G|624
*
5MC6|1|2|C|975
5MC6|1|2|G|976
5MC6|1|2|A|977
5MC6|1|2|A|978
5MC6|1|2|A|979
5MC6|1|2|G|980
*
5MC6|1|2|C|1021
5MC6|1|2|C|1022
5MC6|1|2|A|1023
5MC6|1|2|U|1024
5MC6|1|2|A|1025
5MC6|1|2|A|1026
5MC6|1|2|A|1027
5MC6|1|2|C|1028
5MC6|1|2|U|1029
5MC6|1|2|A|1030
5MC6|1|2|U|1031
5MC6|1|2|G|1032
*
5MC6|1|2|U|1103
5MC6|1|2|U|1104
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AS
- 60S ribosomal protein L41-A
- Chain AT
- 60S ribosomal protein L43-A
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain Z
- 40S ribosomal protein S14-A
- Chain b
- 40S ribosomal protein S22-A
- Chain c
- 40S ribosomal protein S23-A
- Chain e
- 40S ribosomal protein S26-A
Coloring options: