J4_5MC6_004

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MC6_004 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1362

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_43318.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5MC6|1|BQ|C|185
5MC6|1|BQ|U|186
5MC6|1|BQ|A|187
5MC6|1|BQ|U|188
5MC6|1|BQ|G|189
*
5MC6|1|BQ|C|205
5MC6|1|BQ|G|206
5MC6|1|BQ|U|207
5MC6|1|BQ|C|208
*
5MC6|1|BQ|G|212
5MC6|1|BQ|A|213
5MC6|1|BQ|G|214
*
5MC6|1|BQ|C|226
5MC6|1|BQ|G|227
5MC6|1|BQ|U|228
5MC6|1|BQ|G|229
5MC6|1|BQ|U|230
5MC6|1|BQ|G|231

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BE

60S ribosomal protein L4-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA