J4_5MC6_008
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MC6_008 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0774
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
5MC6|1|BQ|G|2130
5MC6|1|BQ|A|2131
5MC6|1|BQ|C|2132
5MC6|1|BQ|U|2133
5MC6|1|BQ|G|2134
*
5MC6|1|BQ|C|2146
5MC6|1|BQ|A|2147
5MC6|1|BQ|U|2148
5MC6|1|BQ|A|2149
5MC6|1|BQ|G|2150
*
5MC6|1|BQ|U|2186
5MC6|1|BQ|G|2187
5MC6|1|BQ|A|2188
5MC6|1|BQ|U|2189
5MC6|1|BQ|U|2190
*
5MC6|1|BQ|A|2317
5MC6|1|BQ|U|2318
5MC6|1|BQ|U|2319
5MC6|1|BQ|A|2320
5MC6|1|BQ|A|2321
5MC6|1|BQ|C|2322
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AS
- 60S ribosomal protein L41-A
- Chain AT
- 60S ribosomal protein L43-A
- Chain AW
- 60S ribosomal protein L2-A
Coloring options: