J4_5MC6_016
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 5MC6|1|BQ|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MC6_016 not in the Motif Atlas
- Homologous match to J4_8CRE_008
- Geometric discrepancy: 0.0969
- The information below is about J4_8CRE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5MC6|1|BQ|C|2654
5MC6|1|BQ|U|2655
5MC6|1|BQ|A|2656
5MC6|1|BQ|A|2657
5MC6|1|BQ|G|2658
*
5MC6|1|BQ|U|2712
5MC6|1|BQ|U|2713
5MC6|1|BQ|G|2714
5MC6|1|BQ|A|2715
5MC6|1|BQ|U|2716
*
5MC6|1|BQ|A|2740
5MC6|1|BQ|C|2741
5MC6|1|BQ|C|2742
*
5MC6|1|BQ|G|2751
5MC6|1|BQ|U|2752
5MC6|1|BQ|G|2753
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AP
- 60S ribosomal protein L42-A
- Chain AV
- 60S ribosomal protein L29
- Chain BI
- 60S ribosomal protein L5
- Chain BJ
- 60S ribosomal protein L21-A
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