J4_5MDY_008

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MDY_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0468

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5MDY|1|1|A|1772
5MDY|1|1|A|1773
5MDY|1|1|C|1774
5MDY|1|1|U|1775
5MDY|1|1|G|1776
*
5MDY|1|1|C|1788
5MDY|1|1|A|1789
5MDY|1|1|C|1790
5MDY|1|1|A|1791
5MDY|1|1|G|1792
*
5MDY|1|1|U|1827
5MDY|1|1|G|1828
5MDY|1|1|A|1829
5MDY|1|1|C|1830
*
5MDY|1|1|G|1975
5MDY|1|1|U|1976
5MDY|1|1|A|1977
5MDY|1|1|A|1978
5MDY|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2