J4_5ME1_001

3D structure

PDB id

5ME1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5ME1|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ME1_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.0721

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5ME1|1|A|G|115
5ME1|1|A|A|116
5ME1|1|A|G|117
5ME1|1|A|U|118
5ME1|1|A|A|119
5ME1|1|A|A|120
5ME1|1|A|U|121
5ME1|1|A|G|122
*
5ME1|1|A|U|239
5ME1|1|A|G|240
*
5ME1|1|A|C|286
5ME1|1|A|U|287
5ME1|1|A|A|288
5ME1|1|A|G|289
*
5ME1|1|A|C|311
5ME1|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17